莱州湾抗生素抗性基因季节分布特征及影响因素分析

Seasonal Distribution Patterns and Influencing Factors of Antibiotic Resistance Genes in Laizhou Bay

  • 摘要: 本研究通过宏基因组测序技术对2022年莱州湾枯水期(5月)、丰水期(8月)的水体和沉积物样品进行分析,揭示其抗生素抗性基因(Antibiotic Resistance Genes, ARGs)的季节分布特征及其影响因素。共鉴定出19 534条、分属311种ARGs亚型,可对阿尔法霉素类、氟喹诺酮类、氨基糖苷类等28类抗生素产生抗性。将样品按照ARGs亚型检出数量由高至低排序为:丰水期水体、枯水期水体、丰水期沉积物、枯水期沉积物;按照ARGs相对丰度由大到小排序为:丰水期沉积物、枯水期沉积物、丰水期水体、枯水期水体。ARGs的分布与pH、盐度等多种环境因子显著相关。此外,部分ARGs的分布与质粒、整合子、插入序列(Insertion Sequence, IS)等可移动遗传元件(Mobile Genetic Elements, MGEs)呈显著相关性,且ARGs与MGEs的相关性存在季节差异。对宏基因组组装基因组(Metagenome-Assembled Genomes, MAGs)的深入分析显示,水体中ARGs的宿主主要隶属于假单胞菌门(Pseudomonadota)和拟杆菌门(Bacteroidota),沉积物中ARGs的优势宿主为假单胞菌门(Pseudomonadota)和脱硫菌门(Desulfobacterota)。本研究解析的ARGs季节分布规律为莱州湾区域海洋环境管控与生态风险评估提供了科学基础数据。

     

    Abstract: In this study, metagenomic sequencing technology was employed to analyze water and sediment samples collected from Laizhou Bay during the dry season (May) and wet season (August) of 2022, aiming to explore the seasonal distribution characteristics of antibiotic resistance genes (ARGs) and their influencing factors. A total of 19 534 sequences belonging to 311 ARG subtypes were identified, involving 28 classes of antibiotics including elfamycin, fluoroquinolones and aminoglycosides. In terms of the number of detected ARG subtypes, the samples ranked in descending order were: wet-season water, dry-season water, wet-season sediment and dry-season sediment. As for the relative abundance of ARGs, the samples ranked in descending order were: wet-season sediment, dry-season sediment, wet-season water, and dry-season water. The distribution of ARGs was significantly correlated with multiple environmental factors, such as pH and salinity. Moreover, the distribution of certain ARGs showed significant correlations with mobile genetic elements (MGEs), such as plasmids, integrons and insertion sequences (IS), and the correlations between ARGs and MGEs exhibited seasonal differences. Further analysis of metagenome-assembled genomes (MAGs) showed that ARG hosts in water samples were mainly affiliated with Pseudomonadota and Bacteroidota, while those in sediment samples primarily belonged to Pseudomonadota and Desulfobacterota. The findings on seasonal distribution of ARGs in this study can provide scientific data for environmental management and ecological risk assessment in this region.

     

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